Installation

Python installation

The MEDiml package requires python 3.8 or more to be run. If you don’t have it installed on your machine, follow the instructions here.

Install via pip

MEDiml is available on PyPi for installation via pip which allows you to install the package in one step ::: pip install mediml

Install from source

Using Conda

In order to install the package using conda, make sure to have Anaconda distribution on your machine, you can download and install it by following the instructions here.

Note

We recommend updating conda before installing the environnement by running

conda update --yes --name base --channel defaults conda

Cloning the repository

git clone https://github.com/MEDomicsLab/MEDiml.git

Access the package folder
```
cd MEDiml
```
Using anaconda distribution, we will create and activate the mediml environment. You can do so by simply running
```
conda env create --name mediml --file environment.yml
```
Active the installed environment
```
conda activate mediml
```
If you want to run the notebooks, you must add your installed environnement to jupyter notebook kernels
```
python -m ipykernel install --user --name=mediml
```

Using Poetry

Download and install poetry
```
pip install poetry
```

More downloading methods can be found here.

Cloning the repository

git clone https://github.com/MEDomicsLab/MEDiml.git

Access the package folder
```
cd MEDiml
```
Poetry will automatically create a new environment and download the required dependencies after running
```
poetry install
```

The created environment will be activated automatically.

If you wanna run notebooks later, add your installed environnement to jupyter notebook kernels
```
poetry run python -m ipykernel install --user --name={potry_env_name}
```

Note

You can use this following command to get information about the currently activated virtual environment

poetry env info

Now that you have successfully installed the package, we invite you to follow these Instructions to further comprehend how to use it.